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Epidemics
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1. Detecting within-host interactions from genotype combination prevalence data
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Samuel Alizon, Carmen Lía Murall, Emma Saulnier, Mircea T. Sofonea.
1. Publisher's Note
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1. Model-based estimates of transmission of respiratory syncytial virus within households
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Ivy K. Kombe, Patrick K. Munywoki, Marc Baguelin, D. James Nokes, Graham F. Medley.
1. Acknowledgement to reviewers of Epidemics - The Journal on Infectious Disease Dynamics
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2. A systematic review of MERS-CoV seroprevalence and RNA prevalence in dromedary camels: Implications for animal vaccination
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Amy Dighe, Thibaut Jombart, Maria D. Van Kerkhove, Neil Ferguson.
2. Network analyses of transhumance movements and simulations of foot-and-mouth disease virus transmission among mobile livestock in Cameroon
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Tác giả
Laura W. Pomeroy, Mark Moritz, Rebecca Garabed.
2. A practical generation-interval-based approach to inferring the strength of epidemics from their speed
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Sang Woo Park, David Champredon, Joshua S. Weitz, Jonathan Dushoff.
2. Fogarty International Center collaborative networks in infectious disease modeling: Lessons learnt in research and capacity building
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Martha I. Nelson, James O. Lloyd-Smith, Lone Simonsen, Andrew Rambaut, Cécile Viboud.
3. Household transmission and disease transmissibility of a large HAV outbreak in Lazio, Italy, 2016–2017
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Giorgio Guzzetta, Claudia Minosse, Raffaella Pisapia, Emanuela Giombini, ... Simone Lanini.
3. Impact of sexual trajectories of men who have sex with men on the reduction in HIV transmission by pre-exposure prophylaxis
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Ganna Rozhnova, Janneke C.M. Heijne, Maartje Basten, Chantal den Daas, ... Mirjam Kretzschmar.
3. GEOFIL: A spatially-explicit agent-based modelling framework for predicting the long-term transmission dynamics of lymphatic filariasis in American Samoa
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Tác giả
Zhijing Xu, Patricia M. Graves, Colleen L. Lau, Archie Clements, Kathryn Glass.
3. Superensemble forecast of respiratory syncytial virus outbreaks at national, regional, and state levels in the United States
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Julia Reis, Teresa Yamana, Sasikiran Kandula, Jeffrey Shaman.
4. Modeling the role of carrier and mobile herds on foot-and-mouth disease virus endemicity in the Far North Region of Cameroon
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Patrick M Schnell, Yibo Shao, Laura W Pomeroy, Joseph H Tien, ... Rebecca Garabed.
4. Estimating age-mixing patterns relevant for the transmission of airborne infections
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Nicky McCreesh, Carl Morrow, Keren Middelkoop, Robin Wood, Richard G. White.
4. Assessing the role of dens in the spread, establishment and persistence of sarcoptic mange in an endangered canid
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Diego Montecino-Latorre, Brian L. Cypher, Jaime L. Rudd, Deana L. Clifford, Janet E. Foley.
4. A partly stage-structured model for the abundance of salmon lice in salmonid farms
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M. Aldrin, P.A. Jansen, H. Stryhn.
5. Heterogeneous local dynamics revealed by classification analysis of spatially disaggregated time series data
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T. Alex Perkins, Isabel Rodriguez-Barraquer, Carrie Manore, Amir S. Siraj, ... Robert C. Reiner.
5. Highly pathogenic avian influenza H5N8 in south-west France 2016–2017: A modeling study of control strategies
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Alessio Andronico, Aurélie Courcoul, Anne Bronner, Axelle Scoizec, ... Simon Cauchemez.
5. Near-term forecasts of influenza-like illness: An evaluation of autoregressive time series approaches
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Sasikiran Kandula, Jeffrey Shaman.
5. Patterns of seasonal influenza activity in U.S. core-based statistical areas, described using prescriptions of oseltamivir in Medicare claims data
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F. Scott Dahlgren, David K. Shay, Hector S. Izurieta, Richard A. Forshee, Carrie Reed.
6. Analyzing influenza outbreaks in Russia using an age-structured dynamic transmission model
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Tác giả
Vasiliy Leonenko, Georgiy Bobashev.
6. Real-time prediction of influenza outbreaks in Belgium
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Gisele H.B. Miranda, Jan M. Baetens, Nathalie Bossuyt, Odemir M. Bruno, Bernard De Baets.
6. Managing Marek’s disease in the egg industry
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Carly Rozins, Troy Day, Scott Greenhalgh.
6. Transmission on empirical dynamic contact networks is influenced by data processing decisions
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Daniel E. Dawson, Trevor S. Farthing, Michael W. Sanderson, Cristina Lanzas.
7. Improved inference of time-varying reproduction numbers during infectious disease outbreaks
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R.N. Thompson, J.E. Stockwin, R.D. van Gaalen, J.A. Polonsky, ... A. Cori.
7. The contact structure of Great Britain’s salmon and trout aquaculture industry
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A.E. Jones, L.A. Munro, D.M. Green, K.L. Morgan, ... K.J. Sharkey.
7. Confronting data sparsity to identify potential sources of Zika virus spillover infection among primates
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Barbara A. Han, Subhabrata Majumdar, Flavio P. Calmon, Benjamin S. Glicksberg, Kush R. Varshney.
7. Dengue modeling in rural Cambodia: Statistical performance versus epidemiological relevance
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Clara Champagne, Richard Paul, Sowath Ly, Veasna Duong, Bernard Cazelles.
8. Predicting Ebola virus disease risk and the role of African bat birthing
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C. Reed Hranac, Jonathan C. Marshall, Ara Monadjem, David T.S. Hayman.
8. Temperature impacts on dengue emergence in the United States: Investigating the role of seasonality and climate change
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Tác giả
Michael A. Robert, Rebecca C. Christofferson, Paula D. Weber, Helen J. Wearing.
8. A dynamic network model to disentangle the roles of steady and casual partners for HIV transmission among MSM
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Tác giả
D. Hansson, K.Y. Leung, T. Britton, S. Strömdahl.
8. Correlations between stochastic epidemics in two interacting populations
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Sophie R. Meakin, Matt J. Keeling.
9. Accurate forecasts of the effectiveness of interventions against Ebola may require models that account for variations in symptoms during infection
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W.S. Hart, L.F.R. Hochfilzer, N.J. Cunniffe, H. Lee, ... R.N. Thompson.
9. Complementing the power of deep learning with statistical model fusion: Probabilistic forecasting of influenza in Dallas County, Texas, USA
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Tác giả
Marwah Soliman, Vyacheslav Lyubchich, Yulia R. Gel.
9. Estimating HIV incidence from surveillance data indicates a second wave of infections in Brazil
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Tác giả
Tara D. Mangal, Ana Roberta Pati Pascom, Juan F. Vesga, Mariana Veloso Meireles, Timothy B. Hallett.
9. Sexual role and HIV-1 set point viral load among men who have sex with men
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Sarah E. Stansfield, John E. Mittler, Geoffrey S. Gottlieb, James T. Murphy, Steven M. Goodreau.
10. Desirable BUGS in models of infectious diseases
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Megan Auzenbergs, Carla Correia-Gomes, Theo Economou, Rachel Lowe, Kathleen M O’Reilly.
10. Phylogeography of rubella virus in Asia: Vaccination and demography shape synchronous outbreaks
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Brooke A. Bozick, Colin J. Worby, C. Jessica E. Metcalf.
10. Hepatitis C transmission in young people who inject drugs: Insights using a dynamic model informed by state public health surveillance
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Tác giả
Rachel E. Gicquelais, Betsy Foxman, Joseph Coyle, Marisa C. Eisenberg.
10. The impact of influenza vaccination on infection, hospitalisation and mortality in the Netherlands between 2003 and 2015
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Tác giả
J.A. Backer, J. Wallinga, A. Meijer, G.A. Donker, M. van Boven.
11. Spatial analysis made easy with linear regression and kernels
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Tác giả
Philip Milton, Helen Coupland, Emanuele Giorgi, Samir Bhatt.
11. The drivers of squirrelpox virus dynamics in its grey squirrel reservoir host
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Julian Chantrey, Timothy Dale, David Jones, Michael Begon, Andy Fenton.
11. Systematic biases in disease forecasting – The role of behavior change
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Ceyhun Eksin, Keith Paarporn, Joshua S. Weitz
11. Geographic transmission hubs of the 2009 influenza pandemic in the United States
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Stephen M. Kissler, Julia R. Gog, Cécile Viboud, Vivek Charu, Bryan T. Grenfell.
12. Introduction to particle Markov-chain Monte Carlo for disease dynamics modellers
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Akira Endo, Edwin van Leeuwen, Marc Baguelin.
12. Estimating the impact of violent events on transmission in Ebola virus disease outbreak, Democratic Republic of the Congo, 2018–2019
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S. Rae Wannier, Lee Worden, Nicole A. Hoff, Eduardo Amezcua, ... J. Daniel Kelly.
12. Control of Ebola virus disease outbreaks: Comparison of health care worker-targeted and community vaccination strategies
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Tác giả
Alexis Robert, Anton Camacho, W. John Edmunds, Marc Baguelin, Rosalind M. Eggo.
12. Vaccinating children against influenza increases variability in epidemic size
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J.A. Backer, M. van Boven, W. van der Hoek, J. Wallinga.
13. Contemporary statistical inference for infectious disease models using Stan
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Tác giả
Anastasia Chatzilena, Edwin van Leeuwen, Oliver Ratmann, Marc Baguelin, Nikolaos Demiris.
13. Real-time predictions of the 2018–2019 Ebola virus disease outbreak in the Democratic Republic of the Congo using Hawkes point process models
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J. Daniel Kelly, Junhyung Park, Ryan J. Harrigan, Nicole A. Hoff, ... Frederic Paik Schoenberg.
13. Efficient vaccination strategies for epidemic control using network information
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Yingrui Yang, Ashley McKhann, Sixing Chen, Guy Harling, Jukka-Pekka Onnela.
13. The role of intra and inter-hospital patient transfer in the dissemination of heathcare-associated multidrug-resistant pathogens
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T.N. Vilches, M.F. Bonesso, H.M. Guerra, C.M.C.B. Fortaleza, C.P. Ferreira.
14. Approximate Bayesian Computation for infectious disease modelling
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Tác giả
Amanda Minter, Renata Retkute.
14. Variation and trends in transmission dynamics of Methicillin-resistant Staphylococcus aureus in veterans affairs hospitals and nursing homes
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Karim Khader, Alun Thomas, Makoto Jones, Damon Toth, ... Matthew H. Samore.
14. Analyzing and forecasting the Ebola incidence in North Kivu, the Democratic Republic of the Congo from 2018–19 in real time
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Andrei R. Akhmetzhanov, Hyojung Lee, Sung-mok Jung, Taishi Kayano, Hiroshi Nishiura.
14. Assessing reporting delays and the effective reproduction number: The Ebola epidemic in DRC, May 2018–January 2019
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Tác giả
A. Tariq, K. Roosa, K. Mizumoto, G. Chowell.
15. School dismissal as a pandemic influenza response: When, where and for how long?
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Tác giả
Timothy C. Germann, Hongjiang Gao, Manoj Gambhir, Andrew Plummer, ... Amra Uzicanin.
